Data Analysis

TraV: A Genome Context Sensitive Transcriptome Browser

rna-seq

Next-generation sequencing (NGS) technologies like Illumina and ABI Solid enable the investigation of transcriptional activities of genomes. While read mapping tools have been continually improved to enable the processing of the increasing number of reads generated by NGS technologies, analysis ...

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PRADA: Pipeline for RNA sequencing Data Analysis

rna-seq

Technological advances in high throughput sequencing necessitate improved computational tools for processing and analyzing large-scale datasets in a systematic, automated manner. For that purpose, researchers at the MD Anderson Cancer Center have developed PRADA (Pipeline for RNA-Sequencing Data Analysis), a ...

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Comparing Data Across RNA-Seq Studies

rna-seq

High-throughput sequencing is now regularly used for studies of the transcriptome (RNA-seq), particularly for comparisons among experimental conditions. For the time being, a limited number of biological replicates are typically considered in such experiments, leading to low detection power for ...

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