MSI Tutorial: RNA-Seq Analysis

The RNA-Seq analysis tutorial covers the basics of differential expression analysis and touches on other RNA-seq topics such as transcriptome assembly.

  1. Topics Covered:
  2. RNA-Seq vs Microarray technology
  3. Experimental Design
  4. Sequencing Technology
  5. Data Quality Assessments
  6. Mapping RNA-Seq data to a genome
  7. Differential Gene Expression Analysis
  8. Non-mammal specific RNA-Seq issues
  9. Transcriptome assembly and other uses of RNA-seq

The hands-on guided tutorials cover different gene expression analysis using either human or potato training data. Anaylsis is performed using the MSI Galaxy instance.

Tutorial presented on February 25, 2016, by Joshua Baller, Ph. D.

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