RACE-Seq – extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing

August 18, 2016 Leave a comment 5,535 Views

Long non-coding RNAs (lncRNAs) constitute a large, yet mostly uncharacterized fraction of the mammalian transcriptome. Such characterization requires a comprehensive, high-quality annotation of their gene structure and boundaries, which is currently lacking. Here researchers from the Barcelona Institute of Science ...

Identify, quantify and annotate SNPs without any reference genome, using RNA-seq data only

December 31, 2015 Leave a comment 5,009 Views

SNPs (Single Nucleotide Polymorphisms) are genetic markers whose precise identification is a prerequisite for association studies. Methods to identify them are currently well developed for model species, but rely on the availability of a (good) reference genome, and therefore cannot ...

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Tag Archives: annotate

RACE-Seq – extension of human lncRNA transcripts by RACE coupled with long-read high-throughput sequencing

Identify, quantify and annotate SNPs without any reference genome, using RNA-seq data only

EMBR-seq – Enrichment of mRNA by blocked rRNA for bacterial RNA sequencing

rssNMF – A robust semi-supervised NMF model for single cell RNA-seq data

Benchmarking algorithms for pathway activity transformation of single-cell RNA-seq data

scRNA-Seq reveals there are two types of thirst

DBiT-seq – in-tissue barcoding for spatially revolved whole transcriptome sequencing at cellular level

Tempora – Cell trajectory inference using time-series single-cell RNA sequencing data

Upcoming webinar – Cluster Ensemble and Batch Correction Methods for Single Cell RNA-Sequencing Data