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  • NASA GeneLab RNA-Seq Consensus Pipeline – Standardized Processing of Short-Read RNA-Seq Data
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  • 5th RNA Symposium – “Processing RNA”
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Tag Archives: GigaTON

GigaTON – an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas

December 8, 2015 Leave a comment 2,840 Views

The Pacific oyster, Crassostrea gigas, is one of the most important aquaculture shellfish resources worldwide. Important efforts have been undertaken towards a better knowledge of its genome and transcriptome, which makes now C. gigas becoming a model organism among lophotrochozoans, ...

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Recent RNA-SEQ Pubs

Cardioprotection of Panax Notoginseng saponins against acute myocardial infarction and heart failure through inducing autophagy.
METTL3 restrains papillary thyroid cancer progression via m6A/c-Rel/IL-8 mediated neutrophils infiltration.
Identify immune-related genes of adzuki bean weevil (Callosobruchus chinensis) in response to bacteria challenge by transcriptome analysis.
Galectin-1-RNA interaction map reveals potential regulatory roles in angiogenesis.
Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance.
RNA editing enzyme APOBEC3A promotes pro-inflammatory M1 macrophage polarization.

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What is RNA-Seq?

long RNAs are first converted into a library of cDNA fragments through either RNA fragmentation or DNA fragmentation. Sequencing adaptors (blue) are subsequently added to each cDNA fragment and a short sequence is obtained from each cDNA using high-throughput sequencing technology. The resulting sequence reads are aligned with the reference genome or transcriptome, and classified as three types: exonic reads, junction reads and poly(A) end-reads. These three types are used to generate a base-resolution expression profile for each gene. Nat Rev Genet 10(1):57-63 (2009)


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  • rna-seq

    NDRindex – a method for the quality assessment of single-cell RNA-Seq preprocessing data

    9 hours ago
  • rna-seq

    Study defines small-cell lung cancer subtypes and distinct therapeutic vulnerabilities for each type

    10 hours ago
  • The BD AbSeq workflow integrated into the BD Rhapsody system

    Single-cell Multi-Omics: Marrying RNA Seq to protein expression and more

    4 days ago
  • rna-seq

    NASA GeneLab RNA-Seq Consensus Pipeline – Standardized Processing of Short-Read RNA-Seq Data

    4 days ago
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    New approach emerges to better classify, treat brain tumors

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  • baseclick

    The biotech company baseclick GmbH launched a new and highly efficient method for SARS-CoV-2 mutation analysis

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