Tag Archives: high-performance computing

aRNApipe – A balanced, efficient and distributed pipeline for processing RNA-seq data in high performance computing environments

rna-seq

The wide range of RNA-seq applications and their high computational needs require the development of pipelines orchestrating the entire workflow and optimizing usage of available computational resources. Researchers at the HudsonAlpha Institute for Biotechnology have developed aRNApipe, a project-oriented pipeline ...

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Enabling large-scale next-generation sequence assembly with Blacklight

rna-seq

A variety of extremely challenging biological sequence analyses were conducted on the XSEDE large shared memory resource Blacklight, using current bioinformatics tools and encompassing a wide range of scientific applications. These include genomic sequence assembly, very large metagenomic sequence assembly, ...

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