FUCHS – Towards full circular RNA characterization using RNAseq

September 13, 2016 Leave a comment 2,667 Views

Circular RNAs (circRNAs) belong to a recently re-discovered species of RNA that emerge during RNA maturation through a process called back-splicing. A downstream 5’ splice site is linked to an upstream 3’ splice site to form a circular transcript instead ...

EBChangePoint – An empirical Bayes change-point model for identifying 3′ and 5′ alternative splicing by RNA-Seq

February 19, 2016 Leave a comment 4,204 Views

Next-generation RNA sequencing (RNA-seq) has been widely used to investigate alternative isoform regulations. Among them, alternative 3′ splice site (SS) and 5′ SS account for more than 30% of all alternative splicing (AS) events in higher eukaryotes. Recent studies have ...

RNA-Seq Blog Transcriptome Research & Industry News

Tag Archives: splice site

FUCHS – Towards full circular RNA characterization using RNAseq

EBChangePoint – An empirical Bayes change-point model for identifying 3′ and 5′ alternative splicing by RNA-Seq

EMBR-seq – Enrichment of mRNA by blocked rRNA for bacterial RNA sequencing

rssNMF – A robust semi-supervised NMF model for single cell RNA-seq data

Benchmarking algorithms for pathway activity transformation of single-cell RNA-seq data

scRNA-Seq reveals there are two types of thirst

DBiT-seq – in-tissue barcoding for spatially revolved whole transcriptome sequencing at cellular level

Tempora – Cell trajectory inference using time-series single-cell RNA sequencing data

Upcoming webinar – Cluster Ensemble and Batch Correction Methods for Single Cell RNA-Sequencing Data